Training large margin host-pathogen protein-protein interaction predictors
نویسندگان
چکیده
ABDUL HANNAN BASIT, WAJID ARSHAD ABBASI, AMINA ASIF, AND FAYYAZ UL AMIR AFSAR MINHAS † Biomedical Informatics Research Laboratory, Department of Computer and Information Sciences, Pakistan Institute of Engineering and Applied Sciences (PIEAS), Nilore, Islamabad, Pakistan Department of Electrical Engineering, Pakistan Institute of Engineer-ing and Applied Sciences (PIEAS), Nilore, Islamabad, 44000, Pakistan. [email protected]; [email protected]; [email protected]; [email protected]
منابع مشابه
Issues in performance evaluation for host-pathogen protein interaction prediction
The study of interactions between host and pathogen proteins is important for understanding the underlying mechanisms of infectious diseases and for developing novel therapeutic solutions. Wet-lab techniques for detecting protein-protein interactions (PPIs) can benefit from computational predictions. Machine learning is one of the computational approaches that can assist biologists by predictin...
متن کاملPapaya Dieback in Malaysia: A StepTowards A New Insight of Disease Resistance
A recently published article describing the draft genome of Erwiniamallotivora BT-Mardi (1), the causal pathogen of papaya dieback infection in Peninsular Malaysia, hassignificant potential to overcome and reduce the effect of this vulnerable crop (2). The authors found that the draft genome sequenceis approximately 4824 kbp and the G+C content of the genomewas 52-54%, which is very similarto t...
متن کاملMultitask learning for host–pathogen protein interactions
MOTIVATION An important aspect of infectious disease research involves understanding the differences and commonalities in the infection mechanisms underlying various diseases. Systems biology-based approaches study infectious diseases by analyzing the interactions between the host species and the pathogen organisms. This work aims to combine the knowledge from experimental studies of host-patho...
متن کاملProgress in Computational Studies of Host-pathogen Interactions
Host-pathogen interactions are important for understanding infection mechanism and developing better treatment and prevention of infectious diseases. Many computational studies on host-pathogen interactions have been published. Here, we review recent progress and results in this field and provide a systematic summary, comparison and discussion of computational studies on host-pathogen interacti...
متن کاملComputational approaches for prediction of pathogen-host protein-protein interactions
Infectious diseases are still among the major and prevalent health problems, mostly because of the drug resistance of novel variants of pathogens. Molecular interactions between pathogens and their hosts are the key parts of the infection mechanisms. Novel antimicrobial therapeutics to fight drug resistance is only possible in case of a thorough understanding of pathogen-host interaction (PHI) ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- CoRR
دوره abs/1711.07886 شماره
صفحات -
تاریخ انتشار 2017